2003–04 Pro Tour season| Pro Player of the Year | Gabriel Nassif |
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| Rookie of the Year | Julien Nuijten |
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| World Champion | Julien Nuijten |
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| Pro Tours | 7 |
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| Grands Prix | 26 |
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| Start of season | 23 August 2003 |
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| End of season | 5 September 2004 |
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The 2003–04 Pro Tour season was the ninth season of the Magic: The Gathering Pro Tour. On 23 August 2003 the season began with parallel Grand Prixs in Yokohama and London. It ended on 5 September 2004 with the conclusion of the 2004 World Championship in San Francisco. Beginning with this season Wizards of the Coast moved the Pro Tour schedule farther backwards in the year to synchronize it with the calendar year. The season consisted of 26 Grand Prixs and 7 Pro Tours, held in Boston, New Orleans, Amsterdam, Kobe, San Diego, Seattle, and San Francisco. Also the Master Series tournaments were discontinued and replaced by payout at the end of the year based on the Pro Player of the year standings. At the end of the season Gabriel Nassif was proclaimed Pro Player of the year, the first player after Kai Budde's three-year-domination period, and also the first player to win the title without winning a Pro Tour in the same season.